Stem Atoms

Guide to reproduce current results published on Pt data: 1.- Setup the code version and requirements:

git clone git@gitlab.hpai.bsc.es:hpai-core/stem_atoms.git
git checkout 3368f323681cd25390afc22b46fede657fc5f7d1
pip install -r requirements.txt

2.- Add HPAI MinIO credentials as minio.json file in the project directory with following structure:

{
  "MINIO_DOMAIN": "https://storage.hpai.bsc.es",
  "ACCESS_KEY": "hpai-minio",
  "SECRET_KEY": GET-IT-FROM-PASSBOLT
}

3.- Download required data and execute the experiment:

python download_data.py
python atoms_detection/dl_full_pipeline.py sac_cnn basic dataset/Coordinate_image_pairs.csv -t 0.89